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We prefer Fluidigm to the competitors.
Strengths: Fluidigm basically invented the digital PCR revolution. With microliter volumes and single molecule counting now possible, we use Fluidigm machines and chips to validate our hard-to-obtain clones. The offer a variety of other services as well as PCR machines, ranging from SNP genotyping to mass cytometry. The guys here know their analysis and business well.
Needs to improve: Use the Biomark machines judiciously since the cost of reagents and materials is not quite at the level of a qPCR. You can get higher sensitivity and percision, but use it only when you need it.